Please note: This instance is for testing/development, and any content submitted may be changed or deleted without warning.
Training eSupport System
  • Log In
    • Login
    • Register
  • About
  • Events
  • Materials
  • e-Learning
  • Workflows
  • Collections
  • Learning paths
  • Directory
    • Trainers
    • Providers
    • Nodes

TeSS makes use of some necessary cookies to provide its core functionality.

See our Privacy Policy for more information.

You can modify your cookie preferences at any time here, or from the link in the footer.

Allow necessary cookies
  1. Home
  2. Materials

Filter

  • Sort

  • Filter Clear filters

    • Scientific topic
    • Comparative transcriptomics2
    • Transcriptome2
    • Transcriptomics2
    • Biological sequences1
    • Epigenomics1
    • Genetic linkage1
    • Linkage1
    • Linkage mapping1
    • Mapping1
    • Sequence analysis1
    • Sequence databases1
    • Synteny1
    • Show N_FILTERS more
    • Tool
    • Galaxy31
    • SCANPY11
    • SAMtools5
    • FastQC4
    • MuSiC suite: PoPMuSiC, HoTMuSiC, and SNPMuSiC4
    • MultiQC4
    • DropletUtils3
    • STAR3
    • anndata3
    • BWA2
    • Cutadapt2
    • FASTX-Toolkit2
    • RSeQC2
    • RStudio2
    • annotatemyids2
    • snpEff2
    • Alevin1
    • BEDTools1
    • BamTools1
    • Biopython1
    • Bwa-mem21
    • DESeq21
    • Falco1
    • FeatureCounts1
    • GOseq1
    • HISAT21
    • HiCExplorer1
    • JBrowse1
    • MACS1
    • R1
    • SRA Software Toolkit1
    • Salmon1
    • Subread1
    • UMI-tools1
    • epiScanpy1
    • fastp1
    • ggplot21
    • lofreq1
    • pathview1
    • pyGenomeTracks1
    • Show N_FILTERS more
    • Content provider
    • Galaxy Training37
    • Show N_FILTERS more
    • Keyword
    • Single Cell27
    • paper-replication11
    • MIGHTS10
    • data management5
    • jupyter-notebook5
    • 10x4
    • Introduction to Galaxy Analyses3
    • data import3
    • transcriptomics3
    • work-in-progress3
    • QC2
    • Transcriptomics2
    • collections2
    • cyoa2
    • rmarkdown-notebook2
    • Contributing to the Galaxy Training Material1
    • Epigenetics1
    • Sequence analysis1
    • Teaching and Hosting Galaxy training1
    • Using Galaxy and Managing your Data1
    • bulk1
    • covid191
    • drosophila1
    • epigenetics1
    • español1
    • mouse1
    • ncbi1
    • plants1
    • rna-seq1
    • Show N_FILTERS more
    • Difficulty level
    • Beginner37
    • Show N_FILTERS more
    • Licence
    • Creative Commons Attribution 4.0 International37
    • Show N_FILTERS more
    • Target audience
    • Students35
    • Instructors2
    • Show N_FILTERS more
    • Author
    • Wendi Bacon13
    • Mehmet Tekman12
    • Julia Jakiela8
    • Bérénice Batut5
    • Pavankumar Videm5
    • Helena Rasche3
    • Morgan Howells3
    • Nicola Soranzo3
    • Anika Erxleben2
    • Daniel Blankenberg2
    • Hans-Rudolf Hotz2
    • Joachim Wolff2
    • Maria Doyle2
    • Marisa Loach2
    • Adelaide Rhodes1
    • Alex Ostrovsky1
    • Anna Syme1
    • Anne Fouilloux1
    • Anton Nekrutenko1
    • Beatriz Serrano-Solano1
    • Belinda Phipson1
    • Camila Goclowski1
    • Clemens Blank1
    • Cristóbal Gallardo1
    • Dave Clements1
    • Diana Chiang Jurado1
    • Ekaterina Polkh1
    • Fidel Ramirez1
    • Graham Etherington1
    • Harriet Dashnow1
    • Jon Trow1
    • Jonathan Manning1
    • Lucille Delisle1
    • Mallory Freeberg1
    • Marius van den Beek1
    • Melanie Föll1
    • Mo Heydarian1
    • Peter van Heusden1
    • Vivek Bhardwaj1
    • Wolfgang Maier1
    • Show N_FILTERS more
    • Contributor
    • Mehmet Tekman
    • Saskia Hiltemann430
    • Helena Rasche391
    • Björn Grüning320
    • Bérénice Batut196
    • Nicola Soranzo110
    • Martin Čech90
    • Anthony Bretaudeau83
    • Niall Beard65
    • Wendi Bacon62
    • Armin Dadras57
    • Marius van den Beek54
    • Nate Coraor52
    • Cristóbal Gallardo49
    • Gildas Le Corguillé48
    • Teresa Müller40
    • Lucille Delisle38
    • William Durand38
    • Pavankumar Videm35
    • Simon Gladman35
    • Wolfgang Maier34
    • Yvan Le Bras34
    • Melanie Föll31
    • Beatriz Serrano-Solano29
    • Simon Bray25
    • Subina Mehta25
    • Anup Kumar23
    • Donny Vrins23
    • Peter van Heusden23
    • Maria Doyle22
    • Bazante Sanders19
    • Julia Jakiela19
    • Anton Nekrutenko16
    • Deepti Varshney16
    • Khaled Jum'ah16
    • Anne Fouilloux15
    • Mélanie Petera13
    • Pratik Jagtap13
    • Timothy J. Griffin13
    • Marie Josse12
    • Pablo Moreno12
    • Delphine Lariviere11
    • Matthias Bernt11
    • Paul Zierep11
    • Gianmauro Cuccuru10
    • Mira Kuntz10
    • David López9
    • Marisa Loach9
    • Stéphanie Robin9
    • Katarzyna Kamieniecka8
    • Leonid Kostrykin8
    • Verena Moosmann8
    • Mallory Freeberg7
    • Anna Syme6
    • Bert Droesbeke6
    • Christopher Barnett6
    • Clemens Blank6
    • Enis Afgan6
    • Florian Christoph Sigloch6
    • Hans-Rudolf Hotz6
    • Linelle Abueg6
    • Morgan Howells6
    • Alireza Khanteymoori5
    • Clea Siguret5
    • Dave Clements5
    • Ekaterina Polkh5
    • John Chilton5
    • John Davis5
    • Kaivan Kamali5
    • Tomas Klingström5
    • Wandrille Duchemin5
    • olisand5
    • Alexandre Cormier4
    • Coline Royaux4
    • Diana Chiang Jurado4
    • Eli Chadwick4
    • Fotis E. Psomopoulos4
    • Alex Ostrovsky3
    • Amirhossein Naghsh Nilchi3
    • Catherine Bromhead3
    • Daniela Schneider3
    • Engy Nasr3
    • Fabio Cumbo3
    • Florian Heyl3
    • Jasper Ouwerkerk3
    • Krzysztof Poterlowicz3
    • Maria Christina Maniou3
    • Mateusz Kuzak3
    • Miaomiao Zhou3
    • Nuwan Goonasekera3
    • Phil Reed3
    • Riccardo Massei3
    • Sofoklis Keisaris3
    • Timon Schlegel3
    • Ahmed Hamid Awan2
    • Andrea Bagnacani2
    • Anika Erxleben2
    • Camila Goclowski2
    • Carlos Chee Mendonça2
    • Christoph Stritt2
    • Show N_FILTERS more
    • Resource type
    • e-learning
    • slides7
    • Show N_FILTERS more
    • Related resource
    • Associated Training Datasets31
    • Associated Workflows29
    • Jupyter Notebook (with Solutions)3
    • Jupyter Notebook (without Solutions)3
    • Quarto/RMarkdown Notebook3
    • cyoa1
    • Show N_FILTERS more
  • Show disabled materials
  • Show archived materials
    • Date added
    • In the last 24 hours
    • In the last 1 week
    • In the last 1 month

e-Learning

  • Subscribe via email

Email Subscription

Register training material

Contributors: Mehmet Tekman

and Resource type: e-learning

37 e-learning materials found
  • e-learning

    Converting between common single cell data formats

    • beginner
    Single Cell data import data management
  • e-learning

    Bulk matrix to ESet | Creating the bulk RNA-seq dataset for deconvolution

    • beginner
    Single Cell data management transcriptomics
  • e-learning

    Converting NCBI Data to the AnnData Format

    • beginner
    Single Cell data import data management
  • e-learning

    Matrix Exchange Format to ESet | Creating a single-cell RNA-seq reference dataset for deconvolution

    • beginner
    Single Cell data management
  • e-learning

    Importing files from public atlases

    • beginner
    Single Cell data import data management
  • e-learning

    A short introduction to Galaxy

    • beginner
    Introduction to Galaxy Analyses español
  • e-learning

    SRA Aligned Read Format to Speed Up SARS-CoV-2 data Analysis

    • beginner
    Using Galaxy and Managing your Data covid19 ncbi
  • e-learning

    Training Infrastructure as a Service

    • beginner
    Teaching and Hosting Galaxy training cyoa
  • e-learning

    1: RNA-Seq reads to counts

    • beginner
    Transcriptomics QC collections mouse
  • e-learning

    Inferring single cell trajectories with Scanpy

    • beginner
    MIGHTS Single Cell paper-replication
  • 1
  • 2
  • 3
  • 4
Training eSupport System
contact@example.com
Contribute
About TeSS
Funding & acknowledgements
Privacy
Cookie preferences
Version: 1.5.0
Source code
API documentation
Bioschemas testing tool

TeSS has received funding from the European Union’s Horizon 2020 research and innovation programme under grant agreement No. 676559.