Training materials
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e-learning
Converting between common single cell data formats
• beginnerSingle Cell data import data management -
e-learning
Bulk matrix to ESet | Creating the bulk RNA-seq dataset for deconvolution
• beginnerSingle Cell data management transcriptomics -
e-learning
Converting NCBI Data to the AnnData Format
• beginnerSingle Cell data import data management -
e-learning
Matrix Exchange Format to ESet | Creating a single-cell RNA-seq reference dataset for deconvolution
• beginnerSingle Cell data management -
e-learning
Importing files from public atlases
• beginnerSingle Cell data import data management -
e-learning
A short introduction to Galaxy
• beginnerIntroduction to Galaxy Analyses español -
e-learning
SRA Aligned Read Format to Speed Up SARS-CoV-2 data Analysis
• beginnerUsing Galaxy and Managing your Data covid19 ncbi -
e-learning
1: RNA-Seq reads to counts
• beginnerTranscriptomics QC collections mouse -
e-learning
Inferring single cell trajectories with Scanpy
• beginnerMIGHTS Single Cell paper-replication -
e-learning
Filter, plot and explore single-cell RNA-seq data with Scanpy (Python)
• beginnerMIGHTS Single Cell jupyter-notebook paper-replication