Training materials
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slides
Single-cell Formats and Resources
• beginnerSingle Cell -
e-learning
Quality and contamination control in bacterial isolate using Illumina MiSeq Data
• beginnerSequence analysis Whole genome sequencing Genomics Microbiology Microbial ecology bacteria illumina microgalaxy -
e-learning
Identification of the micro-organisms in a beer using Nanopore sequencing
• beginnerMetagenomics Microbial ecology Taxonomy Sequence analysis Microbiome beer citizen science metagenomics microgalaxy nanopore -
e-learning
Taxonomic Profiling and Visualization of Metagenomic Data
• beginnerMetagenomics Microbial ecology Taxonomy Sequence analysis Microbiome metagenomics microgalaxy taxonomic profiling -
e-learning
A short introduction to Galaxy
• beginnerIntroduction to Galaxy Analyses español -
e-learning
Fine tune large protein model (ProtTrans) using HuggingFace
• beginnerStatistics and probability Statistics and machine learning deep-learning dephosphorylation-site-prediction fine-tuning interactive-tools jupyter-lab machine-learning -
e-learning
Filter, plot and explore single-cell RNA-seq data with Scanpy (Python)
• beginnerMIGHTS Single Cell jupyter-notebook paper-replication -
e-learning
Generating a single cell matrix using Alevin
• beginnerMIGHTS Single Cell paper-replication -
e-learning
JupyterLab in Galaxy
• beginnerUsing Galaxy and Managing your Data interactive-tools -
e-learning
Using the VGP workflows to assemble a vertebrate genome with HiFi and Hi-C data
•• intermediateSequence assembly Chromosome conformation capture Assembly VGP biodiversity eukaryote pacbio