Please note: This instance is for testing/development, and any content submitted may be changed or deleted without warning.
Training eSupport System
  • Log In
    • Login
    • Register
  • About
  • Events
  • Materials
  • e-Learning
  • Workflows
  • Collections
  • Learning paths
  • Directory
    • Trainers
    • Providers
    • Nodes

TeSS makes use of some necessary cookies to provide its core functionality.

See our Privacy Policy for more information.

You can modify your cookie preferences at any time here, or from the link in the footer.

Allow necessary cookies
  1. Home
  2. Materials

Filter

  • Sort

  • Filter Clear filters

    • Scientific topic
    • Antimicrobial stewardship2
    • Assembly2
    • Biological sequences2
    • Community analysis2
    • Environmental microbiology2
    • Epidemiology2
    • Exomes2
    • Genome annotation2
    • Genomes2
    • Genomics2
    • Medical microbiology2
    • Microbial ecology2
    • Microbial genetics2
    • Microbial physiology2
    • Microbial surveillance2
    • Microbiological surveillance2
    • Microbiology2
    • Microbiome2
    • Molecular community analysis2
    • Molecular infection biology2
    • Molecular microbiology2
    • Personal genomics2
    • Public health2
    • Public health and epidemiology2
    • Sequence analysis2
    • Sequence assembly2
    • Sequence databases2
    • Synthetic genomics2
    • Viral genomics2
    • Whole genomes2
    • Communicable disease1
    • DNA variation1
    • De novo genome sequencing1
    • Disease1
    • Genetic variation1
    • Genome sequencing1
    • Genomic variation1
    • Infectious disease1
    • Metagenomics1
    • Mutation1
    • Pathology1
    • Polymorphism1
    • Shotgun metagenomics1
    • Somatic mutations1
    • Taxonomy1
    • Transmissible disease1
    • WGS1
    • Whole genome resequencing1
    • Whole genome sequencing1
    • Show N_FILTERS more
    • Tool
    • kraken2
    • Galaxy32
    • SAMtools12
    • fastp10
    • BWA9
    • MultiQC9
    • Falco8
    • FastQC8
    • BCFtools7
    • Trimmomatic5
    • seqtk4
    • BEDTools3
    • BamTools3
    • Cutadapt3
    • FreeBayes3
    • GEMINI3
    • MAFFT3
    • NanoPlot3
    • QualiMap3
    • RSeQC3
    • STAR3
    • ggplot23
    • pyGenomeTracks3
    • BLAST2
    • Bandage2
    • COMBAT-TB Workbench2
    • DeepTools2
    • IsoformSwitchAnalyzeR2
    • PfamScan2
    • SRA Software Toolkit2
    • Stacks2
    • StringTie2
    • Trim Galore2
    • compute_sequence_length2
    • gffcompare2
    • gffread2
    • iVar2
    • rnaQUAST2
    • snippy2
    • tb-profiler2
    • ABRicate1
    • Bowtie 21
    • Bracken1
    • Clair31
    • Clustal 2 (Clustal W, Clustal X)1
    • DESeq21
    • EGA1
    • FASTQE1
    • FASTX-Toolkit1
    • FREEC1
    • FastTree1
    • FeatureCounts1
    • Flye1
    • GOseq1
    • Galactic Circos1
    • IDR1
    • JBrowse1
    • Jvarkit1
    • KrakenTools1
    • MACS1
    • MEME1
    • MLST1
    • MSstats1
    • MaxQuant1
    • Medaka1
    • MethylDackel1
    • Minimap21
    • NCBI Resources1
    • Newick Utilities1
    • Nextclade1
    • QUAST1
    • R1
    • RAxML1
    • Recentrifuge1
    • SeqCode1
    • UCSC Genome Browser Utilities1
    • Unicycler1
    • VAPOR1
    • VarScan1
    • Vcflib1
    • iqtree1
    • lofreq1
    • pangolin1
    • pathview1
    • pycoQC1
    • shovill1
    • snpEff1
    • taxonomy_krona_chart1
    • varVAMP1
    • Show N_FILTERS more
    • Content provider
    • Galaxy Training3
    • Show N_FILTERS more
    • Keyword
    • microgalaxy3
    • Heatmap1
    • Microbiome1
    • Nanopore data analysis1
    • Pathogens detection1
    • Phylogenetic tree1
    • Sequence analysis1
    • Variant Analysis1
    • bacteria1
    • cyoa1
    • illumina1
    • one-health1
    • prokaryote1
    • tuberculosis1
    • Show N_FILTERS more
    • Difficulty level
    • Beginner2
    • Intermediate1
    • Show N_FILTERS more
    • Licence
    • Creative Commons Attribution 4.0 International3
    • Show N_FILTERS more
    • Target audience
    • Students3
    • Show N_FILTERS more
    • Author
    • Bérénice Batut2
    • Clea Siguret1
    • Engy Nasr1
    • Paul Zierep1
    • Peter van Heusden1
    • Simon Gladman1
    • Thoba Lose1
    • Show N_FILTERS more
    • Contributor
    • Wolfgang Maier
    • Saskia Hiltemann8
    • Bérénice Batut7
    • Björn Grüning5
    • Cristóbal Gallardo5
    • Helena Rasche5
    • Deepti Varshney3
    • Teresa Müller3
    • Clea Siguret2
    • Paul Zierep2
    • Anthony Bretaudeau1
    • Beatriz Serrano-Solano1
    • Delphine Lariviere1
    • Engy Nasr1
    • Hans-Rudolf Hotz1
    • Linelle Abueg1
    • Mélanie Petera1
    • Nate Coraor1
    • Nuwan Goonasekera1
    • Peter van Heusden1
    • Siyu Chen1
    • Solenne Correard1
    • Tarnima Omara1
    • Verena Moosmann1
    • Willem de Koning1
    • Show N_FILTERS more
    • Resource type
    • e-learning3
    • Show N_FILTERS more
    • Related resource
    • Associated Training Datasets3
    • Associated Workflows3
    • Show N_FILTERS more
  • Show disabled materials
  • Show archived materials
    • Date added
    • In the last 24 hours
    • In the last 1 week
    • In the last 1 month

Training materials

  • Subscribe via email

Email Subscription

Register training material

Tools: kraken2

and Contributors: Wolfgang Maier

3 materials found
  • e-learning

    Quality and contamination control in bacterial isolate using Illumina MiSeq Data

    • beginner
    Sequence analysis Whole genome sequencing Genomics Microbiology Microbial ecology bacteria illumina microgalaxy
  • e-learning

    Pathogen detection from (direct Nanopore) sequencing data using Galaxy - Foodborne Edition

    • beginner
    Metagenomics Microbial ecology Public health and epidemiology Taxonomy Sequence assembly Pathology Sequence analysis Heatmap Microbiome Nanopore data analysis …
  • e-learning

    M. tuberculosis Variant Analysis

    •• intermediate
    Genetic variation Genomics Microbiology Sequence assembly Public health and epidemiology Infectious disease Variant Analysis microgalaxy one-health prokaryote …
Training eSupport System
contact@example.com
Contribute
About TeSS
Funding & acknowledgements
Privacy
Cookie preferences
Version: 1.5.0
Source code
API documentation
Bioschemas testing tool

TeSS has received funding from the European Union’s Horizon 2020 research and innovation programme under grant agreement No. 676559.