Please note: This instance is for testing/development, and any content submitted may be changed or deleted without warning.
Training eSupport System
  • Log In
    • Login
    • Register
  • About
  • Events
  • Materials
  • e-Learning
  • Workflows
  • Collections
  • Learning paths
  • Directory
    • Trainers
    • Providers
    • Nodes

TeSS makes use of some necessary cookies to provide its core functionality.

See our Privacy Policy for more information.

You can modify your cookie preferences at any time here, or from the link in the footer.

Allow necessary cookies
  1. Home
  2. Materials

Filter

  • Sort

  • Filter Clear filters

    • Scientific topic
    • Epigenomics6
    • Comparative transcriptomics4
    • Transcriptome4
    • Transcriptomics4
    • Biological sequences3
    • DNA variation3
    • Genetic variation3
    • Genomic variation3
    • Mutation3
    • Polymorphism3
    • Sequence analysis3
    • Sequence databases3
    • Somatic mutations3
    • Assembly1
    • ChIP-exo1
    • ChIP-seq1
    • ChIP-sequencing1
    • Chip Seq1
    • Chip sequencing1
    • Chip-sequencing1
    • Community analysis1
    • Disease1
    • Environmental microbiology1
    • Epidemiology1
    • Genetic linkage1
    • Linkage1
    • Linkage mapping1
    • Mapping1
    • Metagenomics1
    • Microbial ecology1
    • Microbiome1
    • Molecular community analysis1
    • Pathology1
    • Public health1
    • Public health and epidemiology1
    • Sequence assembly1
    • Shotgun metagenomics1
    • Synteny1
    • Taxonomy1
    • Show N_FILTERS more
    • Tool
    • SAMtools
    • Galaxy214
    • FastQC29
    • MultiQC17
    • scikit-learn15
    • BEDTools14
    • BWA11
    • Cutadapt11
    • DeepTools11
    • SCANPY11
    • fastp11
    • BLAST10
    • taxonomy_krona_chart9
    • FreeBayes8
    • GEMINI8
    • Falco7
    • NanoPlot7
    • STAR7
    • kraken27
    • BamTools6
    • JBrowse6
    • QUAST6
    • Trimmomatic6
    • ggplot26
    • Bandage5
    • Biopython5
    • Bowtie 25
    • HISAT25
    • MetaPhlAn5
    • FASTX-Toolkit4
    • Flye4
    • Galaxy Image Analysis4
    • HUMAnN24
    • KrakenTools4
    • MACS4
    • MaxQuant4
    • MuSiC suite: PoPMuSiC, HoTMuSiC, and SNPMuSiC4
    • Workflow4Metabolomics4
    • anndata4
    • mothur4
    • scikit-image4
    • Bracken3
    • Clustal 1.8 (Clustal W, Clustal X)3
    • Diamond3
    • DropletUtils3
    • Galactic Circos3
    • GraPhlAn3
    • MAFFT3
    • MSstats3
    • Minimap23
    • Newick Utilities3
    • RSeQC3
    • RStudio3
    • Salmon3
    • SeqCode3
    • SortMeRNA3
    • Stacks3
    • StringTie3
    • Trim Galore3
    • annotatemyids3
    • export2graphlan3
    • gffcompare3
    • humann3
    • msConvert3
    • xcms3
    • BCFtools2
    • BUSCO2
    • Bakta2
    • Bwa-mem22
    • Cardinal2
    • ChIPpeakAnno2
    • CheckM2
    • FASTQE2
    • FastTree2
    • GECKO2
    • GOEnrichment2
    • GOseq2
    • Heinz2
    • JBrowse 22
    • MAGeCK2
    • MEGAHIT2
    • MEME2
    • Medaka2
    • Racon2
    • Recentrifuge2
    • RepeatMasker2
    • UCSC Genome Browser Utilities2
    • UMI-tools2
    • UniProt2
    • Unicycler2
    • Unipept2
    • Vcflib2
    • bed to protein map2
    • bx-python2
    • clusterProfiler2
    • compute_sequence_length2
    • customProDB2
    • ewastools2
    • pyGenomeTracks2
    • pycoQC2
    • Show N_FILTERS more
    • Content provider
    • Galaxy Training19
    • Show N_FILTERS more
    • Keyword
    • Epigenetics6
    • Transcriptomics4
    • ChIP-seq3
    • Variant Analysis3
    • QC2
    • Sequence analysis2
    • Single Cell2
    • collections2
    • cyoa2
    • work-in-progress2
    • Heatmap1
    • Introduction to Galaxy Analyses1
    • Microbiome1
    • Nanopore data analysis1
    • Pathogens detection1
    • Phylogenetic tree1
    • bulk1
    • drosophila1
    • microgalaxy1
    • mouse1
    • rna-seq1
    • Show N_FILTERS more
    • Difficulty level
    • Beginner
    • Intermediate3
    • Show N_FILTERS more
    • Licence
    • Creative Commons Attribution 4.0 International19
    • Show N_FILTERS more
    • Target audience
    • Students19
    • Show N_FILTERS more
    • Author
    • Bérénice Batut8
    • Anika Erxleben6
    • Wolfgang Maier4
    • Joachim Wolff3
    • Lucille Delisle3
    • Mallory Freeberg3
    • Maria Doyle3
    • Pavankumar Videm3
    • Vivek Bhardwaj3
    • Engy Nasr2
    • Fidel Ramirez2
    • Florian Heyl2
    • Friederike Dündar2
    • Leily Rabbani2
    • Mehmet Tekman2
    • Mo Heydarian2
    • Alex Ostrovsky1
    • Anton Nekrutenko1
    • Belinda Phipson1
    • Björn Grüning1
    • Clemens Blank1
    • Cristóbal Gallardo1
    • Daniel Blankenberg1
    • Dave Clements1
    • David Salgado1
    • Harriet Dashnow1
    • Helena Rasche1
    • Katarzyna Kamieniecka1
    • Khaled Jum'ah1
    • Krzysztof Poterlowicz1
    • Marius van den Beek1
    • Nicola Soranzo1
    • Paul Zierep1
    • Peter van Heusden1
    • Saskia Hiltemann1
    • Torsten Houwaart1
    • Show N_FILTERS more
    • Contributor
    • Helena Rasche19
    • Saskia Hiltemann18
    • Björn Grüning17
    • Bérénice Batut14
    • Nicola Soranzo11
    • Niall Beard8
    • Armin Dadras7
    • Cristóbal Gallardo6
    • Gildas Le Corguillé6
    • Martin Čech6
    • William Durand6
    • Maria Doyle5
    • Mehmet Tekman5
    • Wolfgang Maier5
    • Anthony Bretaudeau3
    • Ekaterina Polkh3
    • Hans-Rudolf Hotz3
    • Pavankumar Videm3
    • Teresa Müller3
    • Anup Kumar2
    • Fidel Ramirez2
    • Florian Heyl2
    • Joachim Wolff2
    • Leily Rabbani2
    • Lucille Delisle2
    • Mallory Freeberg2
    • Marius van den Beek2
    • Simon Bray2
    • Simon Gladman2
    • Verena Moosmann2
    • Amirhossein Naghsh Nilchi1
    • Anika Erxleben1
    • Anton Nekrutenko1
    • Clea Siguret1
    • Clemens Blank1
    • Deepti Varshney1
    • Engy Nasr1
    • Friederike Dündar1
    • Graeme Tyson1
    • John Davis1
    • Katarzyna Kamieniecka1
    • Khaled Jum'ah1
    • Paul Zierep1
    • Stéphanie Robin1
    • Wendi Bacon1
    • Yvan Le Bras1
    • Show N_FILTERS more
    • Resource type
    • e-learning15
    • slides4
    • Show N_FILTERS more
    • Related resource
    • Associated Training Datasets
    • Associated Workflows21
    • Show N_FILTERS more
  • Show disabled materials
  • Show archived materials
    • Date added
    • In the last 24 hours
    • In the last 1 week
    • In the last 1 month

Training materials

  • Subscribe via email

Email Subscription

Register training material

Tools: SAMtools

and Difficulty level: Beginner

and Related resources: Associated Training Datasets

19 materials found
  • e-learning

    Pathogen detection from (direct Nanopore) sequencing data using Galaxy - Foodborne Edition

    • beginner
    Metagenomics Microbial ecology Public health and epidemiology Taxonomy Sequence assembly Pathology Sequence analysis Heatmap Microbiome Nanopore data analysis …
  • e-learning

    1: RNA-Seq reads to counts

    • beginner
    Transcriptomics QC collections mouse
  • e-learning

    Identification of the binding sites of the T-cell acute lymphocytic leukemia protein 1 (TAL1)

    • beginner
    Epigenomics ChIP-seq Epigenetics
  • e-learning

    Identification of the binding sites of the Estrogen receptor

    • beginner
    Epigenomics ChIP-seq Epigenetics work-in-progress
  • e-learning

    Formation of the Super-Structures on the Inactive X

    • beginner
    Epigenomics ChIP-seq Epigenetics
  • e-learning

    Differential abundance testing of small RNAs

    • beginner
    Transcriptomics
  • e-learning

    Small Non-coding RNA Clustering using BlockClust

    • beginner
    Transcriptomics
  • e-learning

    Pre-processing of Single-Cell RNA Data

    • beginner
    Single Cell work-in-progress
  • e-learning

    ATAC-Seq data analysis

    • beginner
    Epigenomics Epigenetics
  • e-learning

    NGS data logistics

    • beginner
    Introduction to Galaxy Analyses
  • 1
  • 2
Training eSupport System
contact@example.com
Contribute
About TeSS
Funding & acknowledgements
Privacy
Cookie preferences
Version: 1.5.0
Source code
API documentation
Bioschemas testing tool

TeSS has received funding from the European Union’s Horizon 2020 research and innovation programme under grant agreement No. 676559.