e-Learning
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e-learning
Cleaning GBIF data for the use in Ecology
• beginnerEcology biodiversity data cleaning data management gbif -
e-learning
RAD-Seq de-novo data analysis
• beginnerEcology EBV dataset EBV workflow Genetic composition EBV class RAD-seq Species populations EBV class biodiversity -
e-learning
Creating FAIR Quality assessment reports and draft of Data Papers from EML metadata with MetaShRIMPS
• beginnerEcology Data Paper EML FAIR Metadata biodiversity -
e-learning
Obis marine indicators
• beginnerEcology Biodiversity Data mining biodiversity earth-system marine omics ocean -
e-learning
Genome Assembly Quality Control
•• intermediateSequence assembly Biodiversity Data quality management Assembly assembly biodiversity quality control -
e-learning
Masking repeats with RepeatMasker
• beginnerGenomics Sequence composition, complexity and repeats Genome Annotation biodiversity eukaryote -
e-learning
Functional annotation of protein sequences
• beginnerGenomics Function analysis Protein sites, features and motifs Genome Annotation biodiversity eukaryote -
e-learning
Refining Genome Annotations with Apollo (prokaryotes)
•• intermediateGenomics Microbiology Gene and protein families Sequence analysis Genome Annotation apollo2 biodiversity gmod jbrowse1 microgalaxy … -
e-learning
Using the VGP workflows to assemble a vertebrate genome with HiFi and Hi-C data
•• intermediateSequence assembly Chromosome conformation capture Assembly VGP biodiversity eukaryote pacbio -
e-learning
Vertebrate genome assembly using HiFi, Bionano and Hi-C data - Step by Step
•• intermediateSequence assembly Genomics Biodiversity Assembly VGP biodiversity eukaryote pacbio