Please note: This instance is for testing/development, and any content submitted may be changed or deleted without warning.
Training eSupport System
  • Log In
    • Login
    • Register
  • About
  • Events
  • Materials
  • e-Learning
  • Workflows
  • Collections
  • Learning paths
  • Directory
    • Trainers
    • Providers
    • Nodes

TeSS makes use of some necessary cookies to provide its core functionality.

See our Privacy Policy for more information.

You can modify your cookie preferences at any time here, or from the link in the footer.

Allow necessary cookies
  1. Home
  2. Materials

Filter

  • Sort

  • Filter Clear filters

    • Scientific topic
    • Biological sequences4
    • Sequence analysis4
    • Sequence databases4
    • Assembly3
    • Sequence assembly3
    • DNA variation2
    • Genetic variation2
    • Genomic variation2
    • Metagenomics2
    • Mutation2
    • Polymorphism2
    • Shotgun metagenomics2
    • Somatic mutations2
    • Antimicrobial stewardship1
    • Community analysis1
    • DNA polymorphism1
    • Disease1
    • Environmental microbiology1
    • Epidemiology1
    • Epigenomics1
    • Exomes1
    • Genetic linkage1
    • Genome annotation1
    • Genomes1
    • Genomics1
    • Linkage1
    • Linkage mapping1
    • Mapping1
    • Medical microbiology1
    • Microbial ecology1
    • Microbial genetics1
    • Microbial physiology1
    • Microbial surveillance1
    • Microbiological surveillance1
    • Microbiology1
    • Microbiome1
    • Microsatellites1
    • Molecular community analysis1
    • Molecular infection biology1
    • Molecular microbiology1
    • Pathology1
    • Personal genomics1
    • Public health1
    • Public health and epidemiology1
    • RFLP1
    • SNP1
    • Single nucleotide polymorphism1
    • Synteny1
    • Synthetic genomics1
    • Taxonomy1
    • VNTR1
    • Variable number of tandem repeat polymorphism1
    • Viral genomics1
    • Whole genomes1
    • snps1
    • Show N_FILTERS more
    • Tool
    • BamTools
    • Galaxy324
    • FastQC32
    • SAMtools27
    • Bioconductor23
    • MultiQC22
    • BWA20
    • fastp17
    • BEDTools15
    • scikit-learn15
    • Cutadapt14
    • Data Stewardship Wizard14
    • SCANPY14
    • JBrowse13
    • BLAST12
    • DeepTools12
    • QUAST10
    • STAR10
    • ggplot210
    • BUSCO9
    • Falco9
    • FreeBayes9
    • GEMINI9
    • taxonomy_krona_chart9
    • NanoPlot8
    • Trimmomatic8
    • kraken28
    • BCFtools7
    • FASTX-Toolkit7
    • Galaxy Image Analysis7
    • HISAT27
    • RStudio7
    • msConvert7
    • scikit-image7
    • Bandage6
    • Biopython6
    • MAFFT6
    • MaxQuant6
    • Open Babel6
    • Workflow4Metabolomics6
    • seqtk6
    • Bowtie 25
    • Flye5
    • Galactic Circos5
    • MetaPhlAn5
    • Minimap25
    • MuSiC suite: PoPMuSiC, HoTMuSiC, and SNPMuSiC5
    • RSeQC5
    • StringTie5
    • annotatemyids5
    • compute_sequence_length5
    • gffcompare5
    • gffread5
    • xcms5
    • Bwa-mem24
    • Chipster4
    • Diamond4
    • GOseq4
    • HUMAnN24
    • KrakenTools4
    • MACS4
    • MSstats4
    • Merqury4
    • Newick Utilities4
    • SRA Software Toolkit4
    • The Protein Data Bank (PDB)4
    • Trim Galore4
    • UniProt4
    • anndata4
    • mothur4
    • snpEff4
    • Apollo3
    • Bracken3
    • BridgeDb3
    • BridgeDbR3
    • Cardinal3
    • CellProfiler3
    • Clustal 1.8 (Clustal W, Clustal X)3
    • DISEASES3
    • DropletUtils3
    • FastTree3
    • GenomeScope 2.03
    • GraPhlAn3
    • InterMine3
    • InterMineR3
    • InterProScan (EBI)3
    • MGnify (was EBI Metagenomics)3
    • Ontology Lookup Service3
    • QualiMap3
    • R3
    • RDKit3
    • Salmon3
    • SeqCode3
    • SortMeRNA3
    • Stacks3
    • UCSC Genome Browser Utilities3
    • Unicycler3
    • Unipept3
    • Vcflib3
    • bed to protein map3
    • Show N_FILTERS more
    • Content provider
    • Galaxy Training7
    • Show N_FILTERS more
    • Keyword
    • microgalaxy3
    • Sequence analysis2
    • Variant Analysis2
    • Assembly1
    • Epigenetics1
    • Heatmap1
    • Microbiome1
    • Nanopore data analysis1
    • Pathogens detection1
    • Phylogenetic tree1
    • assembly1
    • cyoa1
    • metagenomics1
    • one-health1
    • prokaryote1
    • virology1
    • Show N_FILTERS more
    • Difficulty level
    • Beginner6
    • Intermediate1
    • Show N_FILTERS more
    • Licence
    • Creative Commons Attribution 4.0 International7
    • Show N_FILTERS more
    • Target audience
    • Students7
    • Show N_FILTERS more
    • Author
    • Bérénice Batut3
    • Engy Nasr2
    • Joachim Wolff2
    • Alex Ostrovsky1
    • Anton Nekrutenko1
    • Cristóbal Gallardo1
    • Florian Heyl1
    • Helena Rasche1
    • Paul Zierep1
    • Pavankumar Videm1
    • Polina Polunina1
    • Saskia Hiltemann1
    • Wolfgang Maier1
    • Show N_FILTERS more
    • Contributor
    • Helena Rasche7
    • Saskia Hiltemann7
    • Björn Grüning6
    • Bérénice Batut5
    • Niall Beard3
    • Nicola Soranzo3
    • William Durand3
    • Wolfgang Maier3
    • Anthony Bretaudeau2
    • Anton Nekrutenko2
    • Cristóbal Gallardo2
    • Alex Ostrovsky1
    • Anup Kumar1
    • Deepti Varshney1
    • Ekaterina Polkh1
    • Engy Nasr1
    • Florian Heyl1
    • Gildas Le Corguillé1
    • Hans-Rudolf Hotz1
    • Lucille Delisle1
    • Maria Doyle1
    • Mehmet Tekman1
    • Mélanie Petera1
    • Nate Coraor1
    • Paul Zierep1
    • Pavankumar Videm1
    • Polina Polunina1
    • Teresa Müller1
    • Vijay1
    • Show N_FILTERS more
    • Resource type
    • e-learning6
    • slides1
    • Show N_FILTERS more
    • Related resource
    • Associated Training Datasets6
    • Associated Workflows6
    • Show N_FILTERS more
  • Show disabled materials
  • Show archived materials
    • Date added
    • In the last 24 hours
    • In the last 1 week
    • In the last 1 month

Training materials

  • Subscribe via email

Email Subscription

Register training material

Tools: BamTools

7 materials found
  • e-learning

    Pathogen detection from (direct Nanopore) sequencing data using Galaxy - Foodborne Edition

    • beginner
    Metagenomics Microbial ecology Public health and epidemiology Taxonomy Sequence assembly Pathology Sequence analysis Heatmap Microbiome Nanopore data analysis …
  • e-learning

    Assembly of metagenomic sequencing data

    • beginner
    Sequence assembly Metagenomics Assembly assembly metagenomics microgalaxy
  • e-learning

    Avian influenza viral strain analysis from gene segment sequencing data

    •• intermediate
    Genetic variation Variant Analysis one-health virology
  • e-learning

    Calling variants in non-diploid systems

    • beginner
    Genetic variation Genomics Sequence assembly DNA polymorphism Microbiology Sequence analysis Variant Analysis microgalaxy prokaryote
  • e-learning

    CUT&RUN data analysis

    • beginner
    Epigenomics Epigenetics
  • e-learning

    Mapping

    • beginner
    Sequence analysis Mapping
  • slides

    Mapping

    • beginner
    Sequence analysis
Training eSupport System
contact@example.com
Contribute
About TeSS
Funding & acknowledgements
Privacy
Cookie preferences
Version: 1.5.0
Source code
API documentation
Bioschemas testing tool

TeSS has received funding from the European Union’s Horizon 2020 research and innovation programme under grant agreement No. 676559.