Training materials
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slides
Genome assembly and assembly QC - Introduction short version
• beginnerSequence assembly Assembly -
e-learning
Decontamination of a genome assembly
• beginnerSequence assembly Genomics Biodiversity Assembly biodiversity -
e-learning
Assembly of the mitochondrial genome from PacBio HiFi reads
• beginnerSequence assembly Genomics Biodiversity Mitochondria Assembly biodiversity -
e-learning
Genome Assembly of MRSA from Oxford Nanopore MinION data (and optionally Illumina data)
• beginnerSequence assembly Whole genome sequencing Public health and epidemiology Genomics Microbiology Antimicrobial resistance Assembly amr assembly microgalaxy … -
e-learning
Genome Assembly of a bacterial genome (MRSA) sequenced using Illumina MiSeq Data
• beginnerSequence assembly Whole genome sequencing Public health and epidemiology Genomics Microbiology Assembly assembly illumina microgalaxy -
e-learning
Chloroplast genome assembly
• beginnerSequence assembly Assembly biodiversity jbrowse1 nanopore plants -
e-learning
Large genome assembly and polishing
• beginnerSequence assembly Genomics Biodiversity Assembly assembly biodiversity nanopore plants polishing -
e-learning
Making sense of a newly assembled genome
• beginnerSequence assembly Genomics Microbiology Assembly gmod jbrowse1 microgalaxy prokaryote -
e-learning
Assembly of metagenomic sequencing data
• beginnerSequence assembly Metagenomics Assembly assembly metagenomics microgalaxy -
e-learning
Unicycler Assembly
• beginnerSequence assembly Genomics Microbiology Assembly biodiversity microgalaxy prokaryote
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