Please note: This instance is for testing/development, and any content submitted may be changed or deleted without warning.
Training eSupport System
  • Log In
    • Login
    • Register
  • About
  • Events
  • Materials
  • e-Learning
  • Workflows
  • Collections
  • Learning paths
  • Directory
    • Trainers
    • Providers
    • Nodes

TeSS makes use of some necessary cookies to provide its core functionality.

See our Privacy Policy for more information.

You can modify your cookie preferences at any time here, or from the link in the footer.

Allow necessary cookies
  1. Home
  2. Materials

Filter

  • Sort

  • Filter Clear filters

    • Scientific topic
    • Sequence analysis
    • Community analysis6
    • Environmental microbiology6
    • Microbial ecology6
    • Microbiome6
    • Molecular community analysis6
    • Biological sequences5
    • Sequence databases5
    • Metagenomics4
    • Shotgun metagenomics4
    • Taxonomy4
    • Exomes3
    • Genome annotation3
    • Genomes3
    • Genomics3
    • Personal genomics3
    • Synthetic genomics3
    • Viral genomics3
    • Whole genomes3
    • Antimicrobial stewardship2
    • Assembly2
    • De novo genome sequencing2
    • Genome sequencing2
    • Medical microbiology2
    • Microbial genetics2
    • Microbial physiology2
    • Microbial surveillance2
    • Microbiological surveillance2
    • Microbiology2
    • Molecular infection biology2
    • Molecular microbiology2
    • Sequence assembly2
    • WGS2
    • Whole genome resequencing2
    • Whole genome sequencing2
    • Biodiversity1
    • Computational ecology1
    • DNA metabarcoding1
    • Disease1
    • Ecoinformatics1
    • Ecological informatics1
    • Ecology1
    • Ecosystem science1
    • Environmental metabarcoding1
    • Epidemiology1
    • Metabarcoding1
    • Pathology1
    • Public health1
    • Public health and epidemiology1
    • RNA metabarcoding1
    • eDNA metabarcoding1
    • eRNA metabarcoding1
    • Show N_FILTERS more
    • Tool
    • kraken2
    • Galaxy30
    • FastQC8
    • taxonomy_krona_chart8
    • JBrowse5
    • BamTools4
    • Cutadapt4
    • MetaPhlAn4
    • NanoPlot4
    • fastp4
    • mothur4
    • BLAST3
    • HUMAnN23
    • KrakenTools3
    • MAFFT3
    • MultiQC3
    • Newick Utilities3
    • SAMtools3
    • BWA2
    • Bakta2
    • Bracken2
    • Diamond2
    • FASTQE2
    • GraPhlAn2
    • Minimap22
    • SortMeRNA2
    • export2graphlan2
    • ggplot22
    • humann2
    • pycoQC2
    • staramr2
    • tbl2gff32
    • ABRicate1
    • BCFtools1
    • BEDTools1
    • Bandage1
    • Bowtie1
    • Bowtie 21
    • Clair31
    • Clustal 2 (Clustal W, Clustal X)1
    • DeepTools1
    • FASTX-Toolkit1
    • Falco1
    • FastTree1
    • Flye1
    • FreeBayes1
    • ISEScan1
    • Integron Finder1
    • Krona1
    • MLST1
    • Medaka1
    • NCBI fcs1
    • PlasmidFinder1
    • QIIME1
    • Racon1
    • RapidNJ1
    • Recentrifuge1
    • TRANSIT1
    • Unicycler1
    • Vcflib1
    • bx-python1
    • compute_sequence_length1
    • cshl_fastx_reverse_complement1
    • dada21
    • ete1
    • iqtree1
    • miniasm1
    • orfipy1
    • phyloseq1
    • seqtk1
    • snippy1
    • trimAl1
    • varVAMP1
    • Show N_FILTERS more
    • Content provider
    • Galaxy Training5
    • Show N_FILTERS more
    • Keyword
    • microgalaxy5
    • Microbiome4
    • metagenomics2
    • nanopore2
    • 16S1
    • Heatmap1
    • Nanopore data analysis1
    • Pathogens detection1
    • Phylogenetic tree1
    • Sequence analysis1
    • bacteria1
    • beer1
    • citizen science1
    • cyoa1
    • illumina1
    • metabarcoding1
    • plants1
    • taxonomic profiling1
    • Show N_FILTERS more
    • Difficulty level
    • Beginner
    • Show N_FILTERS more
    • Licence
    • Creative Commons Attribution 4.0 International5
    • Show N_FILTERS more
    • Target audience
    • Students5
    • Show N_FILTERS more
    • Author
    • Bérénice Batut4
    • Paul Zierep2
    • Clea Siguret1
    • Cristóbal Gallardo1
    • Engy Nasr1
    • Polina Polunina1
    • Siyu Chen1
    • Sophia Hampe1
    • Teresa Müller1
    • Show N_FILTERS more
    • Contributor
    • Bérénice Batut5
    • Saskia Hiltemann5
    • Cristóbal Gallardo4
    • Björn Grüning3
    • Helena Rasche3
    • Teresa Müller3
    • Deepti Varshney2
    • Paul Zierep2
    • Wolfgang Maier2
    • Beatriz Serrano-Solano1
    • Clea Siguret1
    • Engy Nasr1
    • Hans-Rudolf Hotz1
    • Nate Coraor1
    • Nuwan Goonasekera1
    • Siyu Chen1
    • Tarnima Omara1
    • Verena Moosmann1
    • Willem de Koning1
    • Show N_FILTERS more
    • Resource type
    • e-learning5
    • Show N_FILTERS more
    • Related resource
    • Associated Training Datasets5
    • Associated Workflows5
    • Show N_FILTERS more
  • Show disabled materials
  • Show archived materials
    • Date added
    • In the last 24 hours
    • In the last 1 week
    • In the last 1 month

Training materials

  • Subscribe via email

Email Subscription

Register training material

Scientific topics: Sequence analysis

and Tools: kraken2

and Difficulty level: Beginner

5 materials found
  • e-learning

    Quality and contamination control in bacterial isolate using Illumina MiSeq Data

    • beginner
    Sequence analysis Whole genome sequencing Genomics Microbiology Microbial ecology bacteria illumina microgalaxy
  • e-learning

    Identification of the micro-organisms in a beer using Nanopore sequencing

    • beginner
    Metagenomics Microbial ecology Taxonomy Sequence analysis Microbiome beer citizen science metagenomics microgalaxy nanopore
  • e-learning

    Taxonomic Profiling and Visualization of Metagenomic Data

    • beginner
    Metagenomics Microbial ecology Taxonomy Sequence analysis Microbiome metagenomics microgalaxy taxonomic profiling
  • e-learning

    Pathogen detection from (direct Nanopore) sequencing data using Galaxy - Foodborne Edition

    • beginner
    Metagenomics Microbial ecology Public health and epidemiology Taxonomy Sequence assembly Pathology Sequence analysis Heatmap Microbiome Nanopore data analysis …
  • e-learning

    16S Microbial analysis with Nanopore data

    • beginner
    Metagenomics Microbial ecology Taxonomy Sequence analysis Metabarcoding 16S Microbiome metabarcoding microgalaxy nanopore …
Training eSupport System
contact@example.com
Contribute
About TeSS
Funding & acknowledgements
Privacy
Cookie preferences
Version: 1.5.0
Source code
API documentation
Bioschemas testing tool

TeSS has received funding from the European Union’s Horizon 2020 research and innovation programme under grant agreement No. 676559.