Training materials
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e-learning
Generating a single cell matrix using Alevin and combining datasets (bash + R)
• beginner10x MIGHTS Single Cell jupyter-notebook paper-replication -
e-learning
Inferring single cell trajectories with Scanpy
• beginner10x MIGHTS Single Cell paper-replication -
e-learning
Filter, plot and explore single-cell RNA-seq data with Scanpy (Python)
• beginner10x MIGHTS Python Single Cell jupyter-notebook paper-replication -
e-learning
Generating a single cell matrix using Alevin
• beginner10x MIGHTS Single Cell paper-replication -
e-learning
Combining single cell datasets after pre-processing
• beginner10x MIGHTS Single Cell paper-replication -
e-learning
Pre-processing of 10X Single-Cell RNA Datasets
• beginner10x Single Cell -
e-learning
Filter, plot, and explore single cell RNA-seq data with Seurat (R)
• beginner10x MIGHTS R Single Cell jupyter-notebook paper-replication rmarkdown-notebook -
e-learning
Filter, plot and explore single-cell RNA-seq data with Scanpy
• beginner10x MIGHTS Single Cell paper-replication -
e-learning
Analysis of plant scRNA-Seq Data with Scanpy
• beginnerSingle Cell paper-replication plants -
e-learning
Inferring single cell trajectories with Monocle3
• beginner10x MIGHTS Single Cell paper-replication