Training materials
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e-learning
DataPLANT ARCs
• beginnerFAIR Data, Workflows, and Research data stewardship fair plants -
e-learning
Analysis of plant scRNA-Seq Data with Scanpy
• beginnerSingle Cell paper-replication plants -
e-learning
Large genome assembly and polishing
• beginnerSequence assembly Assembly assembly nanopore plants polishing -
e-learning
Chloroplast genome assembly
• beginnerSequence assembly Assembly jbrowse1 nanopore plants -
e-learning
16S Microbial analysis with Nanopore data
• beginnerMetagenomics Microbial ecology Taxonomy Sequence analysis Metabarcoding 16S Microbiome metabarcoding microgalaxy nanopore plants -
e-learning
NCBI BLAST+ against the MAdLand
• beginnerSequence analysis plants -
e-learning
From small to large-scale genome comparison
• beginnerGenome Annotation plants prokaryote -
e-learning
ERGA post-assembly QC
• beginnerSequence assembly Assembly QC animals assembly genome plants -
e-learning
Whole transcriptome analysis of Arabidopsis thaliana
• beginnerTranscriptomics miRNA plants stress tolerance -
Training materials
PLAZA is a plant-oriented online resource for comparative, evolutionary and functional genomics
•• intermediateGenotype and phenotype Phylogenomics Evolutionary biology Comparative genomics Functional genomics Plant biology Comparison Visualisation Annotation plants Plants bioinformatics genomics Visualisation Annotation